Preprocess local data into a CellChat object

Various objects are accepted as an input (Seurat, count data matrix, SingleCellExperiment, Anndata)

Possibility to subset and adjust most of CellChat pipeline parameters

Parameters for identifyOverExpressedGenes:

Parameters for computeCommunProb:

Parameters for filterCommunication:

Parameters for computeCommunProbPathway:

Parameters for aggregateNet:

Parameters for netAnalysis_computeCentrality:

Parameters for identifyCommunicationPatterns:

Download CellChat .rds

dataset

First dataset (Reference for differential)

OR

Second dataset

OR